Artificial intelligence publications
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A Genome-Scale Metabolic Flux Model of Escherichia coli K-12 Derived from the EcoCyc Database
We present EcoCyc–18.0–GEM, a genome-scale model of the E. coli K–12 MG1655 metabolic network.
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An Autoencoder with Bilingual Sparse Features for Improved Statistical Machine Translation
We propose a natural autoencoder that maps all the discrete and overlapping sparse features for each SCFG rule into a continuous vector, so that the information encoded in sparse feature…
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Addition of Escherichia coli K-12 Growth Observation and Gene Essentiality Data to the Ecocyc Database
We have integrated data on the growth or nongrowth of E. coli K-12 obtained from published observations using a variety of individual media and from high-throughput phenotype microarrays into the…
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Evaluating Multimedia Features and Fusion for Example-Based Event Detection
To study the value of multimedia features and fusion for representing and learning events from a set of example video clips, we created SESAME, a system for video SEarch with…
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Addition of Escherichia coli K–12 Growth-Observation and Gene Essentiality Data to the EcoCyc database
We have integrated data on the growth or nongrowth of E. coli K-12 obtained from published observations using a variety of individual media and from high-throughput phenotype microarrays into the EcoCyc database.
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PortEco: A Resource for Exploring Bacterial Biology through High-Throughput Data and Analysis Tools
PortEco ( http://porteco.org) aims to collect, curate and provide data and analysis tools to support basic biological research in Escherichia coli.
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The Metacyc Database of Metabolic Pathways and Enzymes and the Biocyc Collection of Pathway/Genome Databases
MetaCyc (MetaCyc.org) is a universal database of metabolic pathways and enzymes from all domains of life. The pathways in MetaCyc are curated from the primary scientific literature, and are experimentally…
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The EcoCyc Database
The long-term goal of the project is to describe the complete molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to…
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The MetaCyc database of pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
The MetaCyc database (MetaCyc.org) is a comprehensive and freely accessible database describing metabolic pathways and enzymes from all domains of life.
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Unsupervised Discovery and Extraction of Semi-Structured Regions in Text Via Self-Information
We present initial work that uses significant patterns to generate extraction rules, and conclude with a discussion of future directions of our work.
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Metabolic Reconstruction Databases and Their Application to Metabolomics Research
This chapter describes the MetaCyc family of Pathway/Genome Databases (PGDBs).
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Discovering Action Idioms: Bridging the Gap between System-Level Events and Human-Level Actions
We present a sequential pattern mining approach to discovering human-level actions-action idioms - from instrumentation logs of lower-level events.