Artificial intelligence publications
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A Framework for Application of Metabolic Modeling in Yeast to Predict the Effects of Nssnv in Human Orthologs
Here we present the next step in the workflow toward using yeast metabolic modeling to predict human metabolic behavior resulting from nsSNV.
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An Autoencoder with Bilingual Sparse Features for Improved Statistical Machine Translation
We propose a natural autoencoder that maps all the discrete and overlapping sparse features for each SCFG rule into a continuous vector, so that the information encoded in sparse feature…
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Addition of Escherichia coli K-12 Growth Observation and Gene Essentiality Data to the Ecocyc Database
We have integrated data on the growth or nongrowth of E. coli K-12 obtained from published observations using a variety of individual media and from high-throughput phenotype microarrays into the…
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PortEco: A Resource for Exploring Bacterial Biology through High-Throughput Data and Analysis Tools
PortEco ( http://porteco.org) aims to collect, curate and provide data and analysis tools to support basic biological research in Escherichia coli.
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The Metacyc Database of Metabolic Pathways and Enzymes and the Biocyc Collection of Pathway/Genome Databases
MetaCyc (MetaCyc.org) is a universal database of metabolic pathways and enzymes from all domains of life. The pathways in MetaCyc are curated from the primary scientific literature, and are experimentally…
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The EcoCyc Database
The long-term goal of the project is to describe the complete molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to…
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The MetaCyc database of pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
The MetaCyc database (MetaCyc.org) is a comprehensive and freely accessible database describing metabolic pathways and enzymes from all domains of life.
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Evaluating Multimedia Features and Fusion for Example-Based Event Detection
To study the value of multimedia features and fusion for representing and learning events from a set of example video clips, we created SESAME, a system for video SEarch with…
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Addition of Escherichia coli K–12 Growth-Observation and Gene Essentiality Data to the EcoCyc database
We have integrated data on the growth or nongrowth of E. coli K-12 obtained from published observations using a variety of individual media and from high-throughput phenotype microarrays into the EcoCyc database.
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Metabolic Reconstruction Databases and Their Application to Metabolomics Research
This chapter describes the MetaCyc family of Pathway/Genome Databases (PGDBs).
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Unsupervised Discovery and Extraction of Semi-Structured Regions in Text Via Self-Information
We present initial work that uses significant patterns to generate extraction rules, and conclude with a discussion of future directions of our work.
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Discovering Action Idioms: Bridging the Gap between System-Level Events and Human-Level Actions
We present a sequential pattern mining approach to discovering human-level actions-action idioms - from instrumentation logs of lower-level events.