Publications
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Technology’s Role In Curriculum
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The Outcomes of Pathway Database Computations Depend on Pathway Ontology
Different biological notions of pathways are used in different pathway databases. Those pathway ontologies significantly impact pathway computations.
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Recent Innovations in Speech-to-Text Transcription at SRI-ICSI-UW
We summarize recent progress in automatic speech-to-text transcription at SRI, ICSI, and the University of Washington. The work encompasses all components of speech modeling found in a state-of-the-art recognition system,…
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Recruiting Middle School Girls Into It: Data On Girls’ Perceptions And Experiences From A Mixed Demographic Group
This chapter contains sections titled: Literature Review, Research on Recruiting, Research on Career Aspirations, Research Method, Findings, Discussion and Implications, Conclusion, Notes.
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Learning Theories And Education: Toward A Decade Of Synergy
Our goal is to provide an overview of important aspects of human learning that are particularly relevant to educators.
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Escherichia coli K-12: a cooperatively developed annotation snapshot 2005
The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coli K-12. Annotation of the genome of an organism entails identification…
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MetaCyc: a multiorganism database of metabolic pathways and enzymes
MetaCyc contains metabolic pathways, enzymatic reactions, enzymes, chemical compounds, genes and review-level comments.
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The Pathway Tools Cellular Overview Diagram and Omics Viewer
Pathway Tools supports interrogation and exploration of cellular biochemical networks through the overview diagram and a software component called the Omics Viewer.
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Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests
Using the completed V.cholerae genome sequence and PathoLogic software, we created VchoCyc, a pathway-genome database that predicted 171 likely metabolic pathways in the bacterium.
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Advanced Patterns and Matches in Link Analysis
The Link Analysis Workbench (LAW) is a tool for detecting and monitoring situations of interest using inexact matching of graphical patterns.
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Washington State Achievers Scholarship Program Case Study: Final Report
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Creating Fungal Pathway/Genome Databases Using Pathway Tools
The Pathway Tools software allows a group of scientists to create, update, and publish on the Web an evolving knowledge resource describing the genome and biochemical networks of the organism.